Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs12354639 chr10:963681 G/A 9.81E-5 507 23.53 22.73 14.65 KM Plot
LGG rs12437877 chr15:61477482 A/C 0 509 22.78 22.13 3.77 KM Plot
LGG rs12441702 chr15:61492502 T/C 0 509 22.65 23.07 3.77 KM Plot
LGG rs12473645 chr2:74402733 A/G 2.6E-5 495 21.7 24.23 11.57 KM Plot
LGG rs12477737 chr2:86930966 G/T 9.13E-5 498 22.83 23.78 10.93 KM Plot
LGG rs12523189 chr5:157025378 G/A 2.99E-6 488 21.67 25.75 8.03 KM Plot
LGG rs12553162 chr9:133354637 G/A 1.82E-5 502 23.12 21.13 14.98 KM Plot
LGG rs12555547 chr9:22072040 C/G 1.11E-13 509 18.63 19.2 24.23 KM Plot
LGG rs12555797 chr9:133358026 A/G 1.54E-5 509 23.63 20.83 14.98 KM Plot
LGG rs12629138 chr3:53373238 G/T 5.09E-8 504 21.7 26.5 10.97 KM Plot
LGG rs12632671 chr3:53258424 G/A 3.4E-8 502 21.77 27.63 10.97 KM Plot
LGG rs12633047 chr3:53393844 C/T 5.47E-8 504 21.7 26.82 10.97 KM Plot
LGG rs12635973 chr3:53277675 A/C 4.29E-8 509 10.97 26.82 21.7 KM Plot
LGG rs12660483 chr6:88250620 A/G 9.11E-6 509 22.47 24.5 4.08 KM Plot
LGG rs12663932 chr6:88246644 G/A 8.28E-6 508 22.37 24.5 4.08 KM Plot